How to Install and Uninstall allelecount Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 23,2024

1. Install "allelecount" package

This guide covers the steps necessary to install allelecount on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                allelecount
            
                    
    
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2. Uninstall "allelecount" package

Please follow the steps below to uninstall allelecount on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                allelecount
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the allelecount package on Ubuntu 20.10 (Groovy Gorilla)

Package: allelecount
Architecture: amd64
Version: 4.1.0-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 89
Depends: libc6 (>= 2.7), libhts3 (>= 1.10)
Filename: pool/universe/a/allelecount/allelecount_4.1.0-3_amd64.deb
Size: 27652
MD5sum: f36cd63a1871a9cf1c729d56b0bc5494
SHA1: 369aeccd0510bcc2b55e3444ce59a5cb70bef075
SHA256: 9d52f267a575504cc330285456557427873a3d5ec5a416e7210dd9a3ea031ccb
SHA512: 49072153cd881e2964b3110703118a09faeccc64b700b6a6acdb9746653c13be77e588f15834f439ea1c1fa56f4aaefe2566d630be7b12b9d65227bb8b874663
Homepage: https://github.com/cancerit/alleleCount
Description-en: NGS copy number algorithms
Support code for NGS copy number algorithms. Takes a file of locations
and a [cr|b]am file and generates a count of coverage of each allele
[ACGT] at that location (given any filter settings).
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The alleleCount package primarily exists to prevent code duplication
between some other projects, specifically AscatNGS and Battenberg.
Description-md5: f7d2421be2958c8e29f82e4a87bb26db