How to Install and Uninstall augur Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 17,2024

1. Install "augur" package

Here is a brief guide to show you how to install augur on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                augur
            
                    
    
    Copied

2. Uninstall "augur" package

This is a short guide on how to uninstall augur on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                augur
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the augur package on Ubuntu 20.10 (Groovy Gorilla)

Package: augur
Architecture: all
Version: 8.0.0-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 562
Depends: python3-biopython, python3-jsonschema, python3-packaging, python3-pandas (>= 0.16.2), python3-treetime, python3:any, snakemake, python3-boto (>= 2.38.0), python3-cvxopt, python3-dendropy, python3-matplotlib (>= 1.5.1), python3-schedule, python3-seaborn (>= 0.6.0), seqmagick, python3-ipdb, python3-bcbio-gff, mafft, iqtree, raxml, fasttree, vcftools
Filename: pool/universe/a/augur/augur_8.0.0-2_all.deb
Size: 122044
MD5sum: 094802deb04d6bfa2b85f92e4462cc80
SHA1: ea8b09e31229565cb9072b56a5f4610da241b182
SHA256: f42a914cbf67692303abf45599c05d7452074179128ed7ecfb5409dd1989e994
SHA512: fdb435ad237c80e184ec4f2310fc4d0793e9f7fd2879e7d3aa07280e9e714a275448d1bd07648abaacd88a1a6d30a8b9ed59ea0b195d3bbd04d7edecabc98057
Homepage: https://github.com/nextstrain/augur
Description-en: pipeline components for real-time virus analysis
The nextstrain project is an attempt to make flexible informatic
pipelines and visualization tools to track ongoing pathogen evolution as
sequence data emerges. The nextstrain project derives from nextflu,
which was specific to influenza evolution.
.
nextstrain is comprised of three components:
.
* fauna: database and IO scripts for sequence and serological data
* augur: informatic pipelines to conduct inferences from raw data
* auspice: web app to visualize resulting inferences
Description-md5: e2aaa44840d7b632d0e95700bc100196