How to Install and Uninstall cct Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 23,2024

1. Install "cct" package

Please follow the step by step instructions below to install cct on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                cct
            
                    
    
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2. Uninstall "cct" package

Please follow the step by step instructions below to uninstall cct on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                cct
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the cct package on Ubuntu 20.10 (Groovy Gorilla)

Package: cct
Architecture: all
Version: 20170919+dfsg-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 23773
Depends: perl, bioperl, cgview
Filename: pool/universe/c/cct/cct_20170919+dfsg-1_all.deb
Size: 5244000
MD5sum: 839c3bb973674f48769b2652a71e989b
SHA1: 9ef8edabadb0f91ef98148efd2de74832eb52367
SHA256: 850964f9be161ea67ccb4fae17d901a07db9c3c29e2448db416c9c7b7caa4e3c
SHA512: c48b44b1a971adc3c11a09984978ffc075e02f814bc3a26a9f518f15682ef15ab055e2bb1a3e6fc2ba5fd363a1d1b1006e6091c2a40a22c51ee0a6131db518b5
Homepage: http://stothard.afns.ualberta.ca/downloads/CCT/
Description-en: visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
The CGView Comparison Tool (CCT) is a package for visually comparing
bacterial, plasmid, chloroplast, or mitochondrial sequences of interest
to existing genomes or sequence collections. The comparisons are
conducted using BLAST, and the BLAST results are presented in the form
of graphical maps that can also show sequence features, gene and protein
names, COG category assignments, and sequence composition
characteristics. CCT can generate maps in a variety of sizes, including
400 Megapixel maps suitable for posters. Comparisons can be conducted
within a particular species or genus, or all available genomes can be
used. The entire map creation process, from downloading sequences to
redrawing zoomed maps, can be completed easily using scripts included
with the CCT. User-defined features or analysis results can be included
on maps, and maps can be extensively customized. To simplify program
setup, a CCT virtual machine that includes all dependencies preinstalled
is available. Detailed tutorials illustrating the use of CCT are
included with the CCT documentation.
Description-md5: 0ab3a35909def68fd30bc34fe539c2b2