How to Install and Uninstall cct Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 17,2024

1. Install "cct" package

Please follow the instructions below to install cct on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                cct
            
                    
    
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2. Uninstall "cct" package

This guide let you learn how to uninstall cct on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                cct
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the cct package on Ubuntu 21.10 (Impish Indri)

Package: cct
Architecture: all
Version: 1:1.0.0-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 35964
Depends: perl:any, bioperl, cgview, ncbi-blast+-legacy, imagemagick | graphicsmagick, liberror-perl, libtie-ixhash-perl, libwww-perl
Filename: pool/universe/c/cct/cct_1.0.0-1_all.deb
Size: 36332684
MD5sum: bf4cd56f85dc297b8874dd7acb785818
SHA1: 2d1932d2c9be8f64fb69932d11db7251af7db871
SHA256: 3d9bd11b26ffa7e921dd754db047375331bfa9d3236c43d16ba2698e1d896df8
SHA512: 47e3a60378a66793d8ab04945616ac91bd3ed1694489e8cafa99a1a563b69d7a49d9ab781a03e3979309e58c4573931e29f54b5a45c9c0b7348150d3944fd697
Homepage: http://stothard.afns.ualberta.ca/downloads/CCT/
Description-en: visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
The CGView Comparison Tool (CCT) is a package for visually comparing
bacterial, plasmid, chloroplast, or mitochondrial sequences of interest
to existing genomes or sequence collections. The comparisons are
conducted using BLAST, and the BLAST results are presented in the form
of graphical maps that can also show sequence features, gene and protein
names, COG category assignments, and sequence composition
characteristics. CCT can generate maps in a variety of sizes, including
400 Megapixel maps suitable for posters. Comparisons can be conducted
within a particular species or genus, or all available genomes can be
used. The entire map creation process, from downloading sequences to
redrawing zoomed maps, can be completed easily using scripts included
with the CCT. User-defined features or analysis results can be included
on maps, and maps can be extensively customized. To simplify program
setup, a CCT virtual machine that includes all dependencies preinstalled
is available. Detailed tutorials illustrating the use of CCT are
included with the CCT documentation.
Description-md5: 0ab3a35909def68fd30bc34fe539c2b2