How to Install and Uninstall centrifuge Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 24,2024

1. Install "centrifuge" package

Learn how to install centrifuge on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                centrifuge
            
                    
    
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2. Uninstall "centrifuge" package

Learn how to uninstall centrifuge on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                centrifuge
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the centrifuge package on Ubuntu 20.10 (Groovy Gorilla)

Package: centrifuge
Architecture: amd64
Version: 1.0.3-4
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1684
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), python3, hisat2, jellyfish
Filename: pool/universe/c/centrifuge/centrifuge_1.0.3-4_amd64.deb
Size: 538068
MD5sum: 7030a7e6b326121315c15bdf25b44876
SHA1: 4ad37d2286542a776acbc4c4c93290804ddb3dc2
SHA256: 99acec4b864f26139ef33772e102070e5ce66c9d773c29b7c933acb084fea307
SHA512: 6b1d0f3edf448cde12b73502b7a144f66d07c798bae23cdcb253e243a34f83deefb5ccbcdbe126c8daa93c3337902c640912186b8237518c67691ac4c0dda101
Homepage: https://ccb.jhu.edu/software/centrifuge/
Description-en: rapid and memory-efficient system for classification of DNA sequences
Centrifuge is a very rapid and memory-efficient system for the
classification of DNA sequences from microbial samples, with better
sensitivity than and comparable accuracy to other leading systems. The
system uses a novel indexing scheme based on the Burrows-Wheeler
transform (BWT) and the Ferragina-Manzini (FM) index, optimized
specifically for the metagenomic classification problem. Centrifuge
requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial
genomes) yet provides very fast classification speed, allowing it to
process a typical DNA sequencing run within an hour. Together these
advances enable timely and accurate analysis of large metagenomics data
sets on conventional desktop computers.
Description-md5: 0654470974325c1dfa34d590e1faa93b