How to Install and Uninstall centrifuge Package on Ubuntu 21.04 (Hirsute Hippo)

Last updated: May 17,2024

1. Install "centrifuge" package

This guide covers the steps necessary to install centrifuge on Ubuntu 21.04 (Hirsute Hippo)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                centrifuge
            
                    
    
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2. Uninstall "centrifuge" package

Learn how to uninstall centrifuge on Ubuntu 21.04 (Hirsute Hippo):


    
        
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                sudo apt remove
            
                        
                centrifuge
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the centrifuge package on Ubuntu 21.04 (Hirsute Hippo)

Package: centrifuge
Architecture: amd64
Version: 1.0.3-8
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1685
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), python3, hisat2, jellyfish
Filename: pool/universe/c/centrifuge/centrifuge_1.0.3-8_amd64.deb
Size: 538280
MD5sum: a58bc8131080a3a1bb0b34d58d62aafa
SHA1: 0ea69fb35f0ab804f013099d9705db271dae67d0
SHA256: 9de0047bfeb027d1c615b91c5a168ffd5c8e171a650b70559859a54003ec2c65
SHA512: 208d37877635da84375773795eb7ce9ad0b7edf6a1b94e0672ba31297c38e5a811b9f3dc868c50f8b31c83f2f376d92edd9ce65c8e0a6fd1be08e0ab03c739e3
Homepage: https://ccb.jhu.edu/software/centrifuge/
Description-en: rapid and memory-efficient system for classification of DNA sequences
Centrifuge is a very rapid and memory-efficient system for the
classification of DNA sequences from microbial samples, with better
sensitivity than and comparable accuracy to other leading systems. The
system uses a novel indexing scheme based on the Burrows-Wheeler
transform (BWT) and the Ferragina-Manzini (FM) index, optimized
specifically for the metagenomic classification problem. Centrifuge
requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial
genomes) yet provides very fast classification speed, allowing it to
process a typical DNA sequencing run within an hour. Together these
advances enable timely and accurate analysis of large metagenomics data
sets on conventional desktop computers.
Description-md5: 0654470974325c1dfa34d590e1faa93b