How to Install and Uninstall changeo Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 22,2024

1. Install "changeo" package

Please follow the guidance below to install changeo on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                changeo
            
                    
    
    Copied

2. Uninstall "changeo" package

Please follow the steps below to uninstall changeo on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                changeo
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the changeo package on Ubuntu 20.10 (Groovy Gorilla)

Package: changeo
Architecture: all
Version: 1.0.0-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 675
Depends: python3-airr, python3-biopython, python3-numpy, python3-pandas, python3-pkg-resources, python3-presto, python3-scipy, python3-yaml, python3:any
Recommends: python3-biopython (>= 1.65), python3-pandas (>= 0.15)
Filename: pool/universe/c/changeo/changeo_1.0.0-1_all.deb
Size: 96132
MD5sum: 5921b18526574a494f89d8e439933a96
SHA1: cc90854a67affa498136f827f5ebbaaeaa3e0aba
SHA256: 89ea8c55a165c8ef05dca297ffa8d2d7eb2cc39b3f9f6b6dd514a69273aee74f
SHA512: 2aad81ec712de2209291aa63f00a7f77a14e7efb7da4d7e9de3de40b82327f07275c7b2a58c5e1d688026accc7ae7b19afb1a171b7f91ed181cabdc146c295b0
Homepage: https://changeo.readthedocs.io
Description-en: Repertoire clonal assignment toolkit (Python 3)
Change-O is a collection of tools for processing the output of V(D)J
alignment tools, assigning clonal clusters to immunoglobulin (Ig)
sequences, and reconstructing germline sequences.
.
Dramatic improvements in high-throughput sequencing technologies now
enable large-scale characterization of Ig repertoires, defined as the
collection of trans-membrane antigen-receptor proteins located on the
surface of B cells and T cells. Change-O is a suite of utilities to
facilitate advanced analysis of Ig and TCR sequences following germline
segment assignment. Change-O handles output from IMGT/HighV-QUEST
and IgBLAST, and provides a wide variety of clustering methods for
assigning clonal groups to Ig sequences. Record sorting, grouping,
and various database manipulation operations are also included.
.
This package installs the library for Python 3.
Description-md5: f7df938dee11ca49f4c4cdf5a450df24