How to Install and Uninstall changeo Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 07,2024

1. Install "changeo" package

This guide let you learn how to install changeo on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                changeo
            
                    
    
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2. Uninstall "changeo" package

Here is a brief guide to show you how to uninstall changeo on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                changeo
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the changeo package on Ubuntu 21.10 (Impish Indri)

Package: changeo
Architecture: all
Version: 1.0.2-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 691
Depends: python3-airr, python3-biopython, python3-numpy, python3-pandas, python3-pkg-resources, python3-presto, python3-scipy, python3-yaml, python3:any
Recommends: python3-biopython (>= 1.65), python3-pandas (>= 0.15), python3-presto (>= 0.6.2)
Filename: pool/universe/c/changeo/changeo_1.0.2-1_all.deb
Size: 106304
MD5sum: 9dd0292c4611befd620cacee67018bc7
SHA1: 8e4140993c8e161061fa8f0e6db4f460f1425767
SHA256: 06386725a1d1d75e32540aa139a4771511ab6cc7f984561cfb287579a4c09102
SHA512: 00aada5301c99018502d12bfa53879ff095a223d59f19e1d16c21e264818063e7f2a5c6de33d202a8a28a44f1a7ec60ce6ee1d5d7df4d8d2a66525436ceffbbc
Homepage: https://changeo.readthedocs.io
Description-en: Repertoire clonal assignment toolkit (Python 3)
Change-O is a collection of tools for processing the output of V(D)J
alignment tools, assigning clonal clusters to immunoglobulin (Ig)
sequences, and reconstructing germline sequences.
.
Dramatic improvements in high-throughput sequencing technologies now
enable large-scale characterization of Ig repertoires, defined as the
collection of trans-membrane antigen-receptor proteins located on the
surface of B cells and T cells. Change-O is a suite of utilities to
facilitate advanced analysis of Ig and TCR sequences following germline
segment assignment. Change-O handles output from IMGT/HighV-QUEST
and IgBLAST, and provides a wide variety of clustering methods for
assigning clonal groups to Ig sequences. Record sorting, grouping,
and various database manipulation operations are also included.
.
This package installs the library for Python 3.
Description-md5: f7df938dee11ca49f4c4cdf5a450df24