How to Install and Uninstall ea-utils Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 21,2024

1. Install "ea-utils" package

In this section, we are going to explain the necessary steps to install ea-utils on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                ea-utils
            
                    
    
    Copied

2. Uninstall "ea-utils" package

This guide let you learn how to uninstall ea-utils on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                ea-utils
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the ea-utils package on Ubuntu 20.10 (Groovy Gorilla)

Package: ea-utils
Architecture: amd64
Version: 1.1.2+dfsg-5build2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 754
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgsl25 (>= 2.6), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.3), r-base-core, r-cran-getopt, r-cran-hmisc, r-cran-lattice, r-cran-survival, r-cran-formula, r-cran-ggplot2
Recommends: med-config (>= 2.1)
Filename: pool/universe/e/ea-utils/ea-utils_1.1.2+dfsg-5build2_amd64.deb
Size: 228312
MD5sum: cf9fd5d70888616c03d092dc60fe2b9f
SHA1: bec22222316dfa4a631aa6e28586cd4e07897e77
SHA256: e8d215cf4ad83693bcafd60c2895bbfc9f623b5f61fe43fe4694f40bbbd45051
SHA512: e9bf4f79c9799bfa89add891dab8a25cd5e5e455a4591ce6986dcbb9ad53694943be249324d6b22407a002a19ab7a0bf7effb939fb5cb321e6ab1ac63ab7c1be
Homepage: https://expressionanalysis.github.io/ea-utils/
Description-en: command-line tools for processing biological sequencing data
Ea-utils provides a set of command-line tools for processing biological
sequencing data, barcode demultiplexing, adapter trimming, etc.
.
Primarily written to support an Illumina based pipeline - but should work with
any FASTQs.
.
Main Tools are:
.
* fastq-mcf
Scans a sequence file for adapters, and, based on a log-scaled threshold,
determines a set of clipping parameters and performs clipping. Also does
skewing detection and quality filtering.
* fastq-multx
Demultiplexes a fastq. Capable of auto-determining barcode id's based on a
master set fields. Keeps multiple reads in-sync during demultiplexing. Can
verify that the reads are in-sync as well, and fail if they're not.
* fastq-join
Similar to audy's stitch program, but in C, more efficient and supports some
automatic benchmarking and tuning. It uses the same "squared distance for
anchored alignment" as other tools.
* varcall
Takes a pileup and calculates variants in a more easily parameterized manner
than some other tools.
Description-md5: 68e944c2e2cbc6ff1efe839c3a4b9947