How to Install and Uninstall ea-utils Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 26,2024

1. Install "ea-utils" package

This guide covers the steps necessary to install ea-utils on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                ea-utils
            
                    
    
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2. Uninstall "ea-utils" package

Please follow the guidance below to uninstall ea-utils on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                ea-utils
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the ea-utils package on Ubuntu 21.10 (Impish Indri)

Package: ea-utils
Architecture: amd64
Version: 1.1.2+dfsg-6
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 751
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgsl25 (>= 2.6), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.3), r-base-core, r-cran-getopt, r-cran-hmisc, r-cran-lattice, r-cran-survival, r-cran-formula, r-cran-ggplot2
Recommends: med-config (>= 2.1)
Filename: pool/universe/e/ea-utils/ea-utils_1.1.2+dfsg-6_amd64.deb
Size: 219740
MD5sum: 0c48b251b5d26edfb4c2cfe6f88ac184
SHA1: 9e97b8e939397defd4ba33ee86d84587f8ff21da
SHA256: 23cfb41c7ded473a9bdc937f43ef3163c123612445dee082c562d52d22108be3
SHA512: 568b49cf9d9676df21680a246bcdd85fc53611f52598f9d19fd71491b4ee3123d42bf360e2d2c577370b025cfbf6b006e7d60643679b739b754494619c0c5b71
Homepage: https://expressionanalysis.github.io/ea-utils/
Description-en: command-line tools for processing biological sequencing data
Ea-utils provides a set of command-line tools for processing biological
sequencing data, barcode demultiplexing, adapter trimming, etc.
.
Primarily written to support an Illumina based pipeline - but should work with
any FASTQs.
.
Main Tools are:
.
* fastq-mcf
Scans a sequence file for adapters, and, based on a log-scaled threshold,
determines a set of clipping parameters and performs clipping. Also does
skewing detection and quality filtering.
* fastq-multx
Demultiplexes a fastq. Capable of auto-determining barcode id's based on a
master set fields. Keeps multiple reads in-sync during demultiplexing. Can
verify that the reads are in-sync as well, and fail if they're not.
* fastq-join
Similar to audy's stitch program, but in C, more efficient and supports some
automatic benchmarking and tuning. It uses the same "squared distance for
anchored alignment" as other tools.
* varcall
Takes a pileup and calculates variants in a more easily parameterized manner
than some other tools.
Description-md5: 68e944c2e2cbc6ff1efe839c3a4b9947