How to Install and Uninstall ea-utils Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: December 28,2024

1. Install "ea-utils" package

Please follow the guidelines below to install ea-utils on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                ea-utils
            
                    
    
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2. Uninstall "ea-utils" package

Please follow the step by step instructions below to uninstall ea-utils on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                ea-utils
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the ea-utils package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: ea-utils
Priority: optional
Section: universe/science
Installed-Size: 739
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 1.1.2+dfsg-3
Depends: libc6 (>= 2.15), libgcc1 (>= 1:3.0), libgsl2, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.3), r-base-core, r-cran-getopt, r-cran-hmisc, r-cran-lattice, r-cran-survival, r-cran-formula, r-cran-ggplot2
Recommends: med-config (>= 2.1)
Filename: pool/universe/e/ea-utils/ea-utils_1.1.2+dfsg-3_amd64.deb
Size: 226230
MD5sum: 733e2f3a611121d10759955191885aa8
SHA1: ce99cc6019e9830c1b6501e7badb930eddb30da4
SHA256: dcb0b5e934c5ce1cbb75189e49df96006976199257f7d207efa0b7402fa77e36
Description-en: command-line tools for processing biological sequencing data
Ea-utils provides a set of command-line tools for processing biological
sequencing data, barcode demultiplexing, adapter trimming, etc.
.
Primarily written to support an Illumina based pipeline - but should work with
any FASTQs.
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Main Tools are:
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* fastq-mcf
Scans a sequence file for adapters, and, based on a log-scaled threshold,
determines a set of clipping parameters and performs clipping. Also does
skewing detection and quality filtering.
* fastq-multx
Demultiplexes a fastq. Capable of auto-determining barcode id's based on a
master set fields. Keeps multiple reads in-sync during demultiplexing. Can
verify that the reads are in-sync as well, and fail if they're not.
* fastq-join
Similar to audy's stitch program, but in C, more efficient and supports some
automatic benchmarking and tuning. It uses the same "squared distance for
anchored alignment" as other tools.
* varcall
Takes a pileup and calculates variants in a more easily parameterized manner
than some other tools.
Description-md5: 68e944c2e2cbc6ff1efe839c3a4b9947
Homepage: https://code.google.com/p/ea-utils/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu