How to Install and Uninstall estscan Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 26,2024

1. Install "estscan" package

This guide let you learn how to install estscan on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                estscan
            
                    
    
    Copied

2. Uninstall "estscan" package

Please follow the instructions below to uninstall estscan on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                estscan
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the estscan package on Ubuntu 20.10 (Groovy Gorilla)

Package: estscan
Architecture: amd64
Version: 3.0.3-3build1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 194
Depends: libc6 (>= 2.29), libgfortran5 (>= 8), perl:any
Filename: pool/universe/e/estscan/estscan_3.0.3-3build1_amd64.deb
Size: 45332
MD5sum: bc0db405e99ec1bf4f39a8afcbcc0d17
SHA1: b630c5711c1ba12be81d49f7a43f75d86fa33f39
SHA256: 61122cd429ba101ecea1d4828fd95ef7e4ebe74979e6a943d229118b5378e18b
SHA512: 58ce6717f3ca0861a7da55246506452b0d062e25baf5fddbfe362fede671948345c861c06760da94bea89183cb4216efc5af5b46cbbfd3f714602d768e5ef844
Homepage: http://estscan.sourceforge.net/
Description-en: ORF-independent detector of coding DNA sequences
ESTScan is a program that can detect coding regions in DNA sequences,
even if they are of low quality. ESTScan will also detect and correct
sequencing errors that lead to frameshifts. ESTScan is not a gene
prediction program , nor is it an open reading frame detector. In fact,
its strength lies in the fact that it does not require an open reading
frame to detect a coding region. As a result, the program may miss a
few translated amino acids at either the N or the C terminus, but will
detect coding regions with high selectivity and sensitivity.
.
ESTScan takes advantages of the bias in hexanucleotide usage found in
coding regions relative to non-coding regions. This bias is formalized
as an inhomogeneous 3-periodic fifth-order Hidden Markov Model
(HMM). Additionally, the HMM of ESTScan has been extended to allows
insertions and deletions when these improve the coding region statistics.
Description-md5: e1d137fd1ddc905d38c4fece3ace48ca