How to Install and Uninstall estscan Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 28,2024

1. Install "estscan" package

This tutorial shows how to install estscan on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                estscan
            
                    
    
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2. Uninstall "estscan" package

Please follow the guidelines below to uninstall estscan on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                estscan
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the estscan package on Ubuntu 21.10 (Impish Indri)

Package: estscan
Architecture: amd64
Version: 3.0.3-5
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 195
Depends: libc6 (>= 2.29), libgfortran5 (>= 8), perl:any
Filename: pool/universe/e/estscan/estscan_3.0.3-5_amd64.deb
Size: 46064
MD5sum: aea9a91ac04c2941b87fd2da4e330820
SHA1: c4b6c60256be6f08f604155a0df1d95587839b7b
SHA256: a6cc94f2e9874570b7f707e23360b48c3ebbf1124836debc18b7a1ba6432833b
SHA512: c1ceb1ab431c4361e9162f1ad48eaafb2575c7318bee33242ce42ca6189b967ed455eae5aa33b35771891611f14e9bf9bbe223db0b911744135a8dadef5fa9b1
Homepage: http://estscan.sourceforge.net/
Description-en: ORF-independent detector of coding DNA sequences
ESTScan is a program that can detect coding regions in DNA sequences,
even if they are of low quality. ESTScan will also detect and correct
sequencing errors that lead to frameshifts. ESTScan is not a gene
prediction program , nor is it an open reading frame detector. In fact,
its strength lies in the fact that it does not require an open reading
frame to detect a coding region. As a result, the program may miss a
few translated amino acids at either the N or the C terminus, but will
detect coding regions with high selectivity and sensitivity.
.
ESTScan takes advantages of the bias in hexanucleotide usage found in
coding regions relative to non-coding regions. This bias is formalized
as an inhomogeneous 3-periodic fifth-order Hidden Markov Model
(HMM). Additionally, the HMM of ESTScan has been extended to allows
insertions and deletions when these improve the coding region statistics.
Description-md5: e1d137fd1ddc905d38c4fece3ace48ca