How to Install and Uninstall iva Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 10,2024

1. Install "iva" package

Learn how to install iva on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                iva
            
                    
    
    Copied

2. Uninstall "iva" package

Please follow the guidelines below to uninstall iva on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                iva
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the iva package on Ubuntu 20.10 (Groovy Gorilla)

Package: iva
Architecture: amd64
Version: 1.0.9+ds-10
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 8765
Depends: fastaq (>= 1.6), python3-networkx, python3-pysam, python3:any, perl:any, kmc, mummer, smalt, samtools, python3-numpy, default-jre-headless
Recommends: r-base-core, bioperl, trimmomatic
Filename: pool/universe/i/iva/iva_1.0.9+ds-10_amd64.deb
Size: 8578252
MD5sum: 5c0163fb1007900e74215d8b7534d467
SHA1: c6464a694914c7e9a7e1bbea0327f68aa0efa45f
SHA256: 479b346b67eca33cff60a6d4a1d103ed9e27b7629341517baed0222f34980bd3
SHA512: 1032d22e761dcdab148eb5d4182fe708e832ce4a9547a9bb8ae939915b4fa481c7da96afee172699e58968e6ac93a7c85b8185274264e2bda23c8063ff83e228
Homepage: https://github.com/sanger-pathogens/iva
Description-en: iterative virus sequence assembler
IVA is a de novo assembler designed to assemble
virus genomes that have no repeat sequences,
using Illumina read pairs sequenced from mixed
populations at extremely high depth.
.
IVA's main algorithm works by iteratively extending
contigs using aligned read pairs. Its input can be
just read pairs, or additionally you can provide an
existing set of contigs to be extended. Alternatively,
it can take reads together with a reference sequence.
Description-md5: 698e26411c0dbe5917f816e7b7229be9