How to Install and Uninstall ivar Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 07,2024

1. Install "ivar" package

This is a short guide on how to install ivar on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                ivar
            
                    
    
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2. Uninstall "ivar" package

This is a short guide on how to uninstall ivar on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                ivar
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the ivar package on Ubuntu 20.10 (Groovy Gorilla)

Package: ivar
Architecture: amd64
Version: 1.2.2+dfsg-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1620
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libhts3 (>= 1.10), libstdc++6 (>= 9)
Recommends: samtools
Filename: pool/universe/i/ivar/ivar_1.2.2+dfsg-3_amd64.deb
Size: 204824
MD5sum: 49b89622505285b10aeff96eb37d615d
SHA1: 6f2f01c50e0fece615be9a5efdabebd889b3d79c
SHA256: 63d007f1c1796854b457f7989aa8ff825c2a498f5a6e3f94b8d24e3ba3330e3a
SHA512: 56c33546163f0020b412ca48b811a5f41ce48b6bedc9676788a85edcdbedcff85b952fd823e3de4975047bb767ac2fd3f44cb26fe4c802dac79d73c36bf1ed76
Homepage: https://github.com/andersen-lab/ivar
Description-en: functions broadly useful for viral amplicon-based sequencing
iVar is a computational package that contains functions broadly useful
for viral amplicon-based sequencing. Additional tools for metagenomic
sequencing are actively being incorporated into iVar. While each of
these functions can be accomplished using existing tools, iVar contains
an intersection of functionality from multiple tools that are required
to call iSNVs and consensus sequences from viral sequencing data across
multiple replicates. iVar provided the following functions:
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1. trimming of primers and low-quality bases,
2. consensus calling,
3. variant calling - both iSNVs and insertions/deletions, and
4. identifying mismatches to primer sequences and excluding the
corresponding reads from alignment files.
Description-md5: 0e23cb2ef34819e99960031f64b21c00