How to Install and Uninstall iva Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 10,2024

1. Install "iva" package

This guide let you learn how to install iva on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                iva
            
                    
    
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2. Uninstall "iva" package

Learn how to uninstall iva on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                iva
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the iva package on Ubuntu 21.10 (Impish Indri)

Package: iva
Architecture: amd64
Version: 1.0.9+ds-11
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 8765
Depends: fastaq (>= 1.6), python3-networkx, python3-pysam, python3:any, perl:any, kmc, mummer, smalt, samtools, python3-numpy, default-jre-headless
Recommends: r-base-core, bioperl, trimmomatic
Filename: pool/universe/i/iva/iva_1.0.9+ds-11_amd64.deb
Size: 8578436
MD5sum: d78e9d9de079e6405b76cfd26a2563fe
SHA1: ac2e887809359bbd649e609cdde35c201304ed42
SHA256: 760acb94825dd24cd377d76ad306052e31fc8ca9ce51480d168d0c6795f69539
SHA512: b47975ed7f7e8c69fb928387cf28a04b31771b94987996f508155ee5a329488405d60c7ea2cf716fce7dd11085a252023d8fb0d55353f06ebea31dc209f4a7d3
Homepage: https://github.com/sanger-pathogens/iva
Description-en: iterative virus sequence assembler
IVA is a de novo assembler designed to assemble
virus genomes that have no repeat sequences,
using Illumina read pairs sequenced from mixed
populations at extremely high depth.
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IVA's main algorithm works by iteratively extending
contigs using aligned read pairs. Its input can be
just read pairs, or additionally you can provide an
existing set of contigs to be extended. Alternatively,
it can take reads together with a reference sequence.
Description-md5: 698e26411c0dbe5917f816e7b7229be9