How to Install and Uninstall khmer Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 23,2024

1. Install "khmer" package

Please follow the instructions below to install khmer on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                khmer
            
                    
    
    Copied

2. Uninstall "khmer" package

In this section, we are going to explain the necessary steps to uninstall khmer on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                khmer
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the khmer package on Ubuntu 20.10 (Groovy Gorilla)

Package: khmer
Architecture: amd64
Version: 2.1.2+dfsg-7
Multi-Arch: foreign
Priority: optional
Section: universe/python
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 29834
Depends: khmer-common, python3 (<< 3.9), python3-screed (>= 1.0), libbz2-1.0, libc6 (>= 2.29), libgcc-s1 (>= 3.4), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.4), cython3 (>= 0.26.1), python3 (>= 3.8~), python3-bz2file, python3:any
Filename: pool/universe/k/khmer/khmer_2.1.2+dfsg-7_amd64.deb
Size: 6703296
MD5sum: 898e4b604df1c6b33b89e07224b448bb
SHA1: 9a0061c34498ae3d28122cf686613fd981977c00
SHA256: 709154dac2b42e5a4dbde61bcf7cac493dcbe99653a3f40784089a73cef5fea5
SHA512: 0dd87f0350b2d98813c8b969672557126298e5f8d0ae0ced5a308ac2b140236ec9e4e338abf9fb7902f2748ec35fab9fad0c6a4e2eab5df565a68ce18607e136
Homepage: https://khmer.readthedocs.org
Description-en: in-memory DNA sequence kmer counting, filtering & graph traversal
khmer is a library and suite of command line tools for working with DNA
sequence. It is primarily aimed at short-read sequencing data such as that
produced by the Illumina platform. khmer takes a k-mer-centric approach to
sequence analysis, hence the name.
Description-md5: fcb7ec9befc5e3aef9f670bd332040fb