How to Install and Uninstall ragout Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 23,2024

1. Install "ragout" package

Please follow the guidelines below to install ragout on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                ragout
            
                    
    
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2. Uninstall "ragout" package

Please follow the guidelines below to uninstall ragout on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                ragout
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the ragout package on Ubuntu 20.10 (Groovy Gorilla)

Package: ragout
Architecture: amd64
Version: 2.3-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 9690
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), python3:any, python3-networkx (>= 2.2)
Recommends: sibelia
Filename: pool/universe/r/ragout/ragout_2.3-2_amd64.deb
Size: 2129732
MD5sum: f8999d252cf0b9342defe0921dbc7b9a
SHA1: fdd1dbbb5ad468094c017f15af10ccc7b56954a5
SHA256: fc850b9775092d09a5b99466db9334705a62847256c26bc225ec781918663796
SHA512: ab4d1dd152b0e1d9bb9c3baca6859ac39da2a8bf7c96ba9564c8585cfbab19d1aeb182716b65bfe9ea9e0fa947bb3b8456f84da2e3bef1d2f80e520403144eb7
Homepage: https://github.com/fenderglass/Ragout/
Description-en: Reference-Assisted Genome Ordering UTility
Ragout (Reference-Assisted Genome Ordering UTility) is a tool for
chromosome-level scaffolding using multiple references. Given initial
assembly fragments (contigs/scaffolds) and one or multiple related
references (complete or draft), it produces a chromosome-scale assembly
(as a set of scaffolds).
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The approach is based on the analysis of genome rearrangements (like
inversions or chromosomal translocations) between the input genomes and
reconstructing the most parsimonious structure of the target genome.
.
Ragout now supports both small and large genomes (of mammalian scale
and complexity). The assembly of highly polymorphic genomes is
currently limited.
Description-md5: 8f0c7441aed2bf02da71eefce4a282fe