How to Install and Uninstall rna-star Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 06,2024

1. Install "rna-star" package

Learn how to install rna-star on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                rna-star
            
                    
    
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2. Uninstall "rna-star" package

Please follow the steps below to uninstall rna-star on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                rna-star
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the rna-star package on Ubuntu 20.10 (Groovy Gorilla)

Package: rna-star
Architecture: amd64
Version: 2.7.5c+dfsg-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1251
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.3.1), libgomp1 (>= 6), libhts3 (>= 1.10), libstdc++6 (>= 9)
Filename: pool/universe/r/rna-star/rna-star_2.7.5c+dfsg-3_amd64.deb
Size: 569872
MD5sum: 2e3286d4d715649d4ee3fecf77fd992c
SHA1: 4ab839276f87ad3338cdde9753fda451ab198982
SHA256: 95d61a1d30a5e4eacdfaa8574bc5de3fe41f58f454fc3952896e99408b3f5452
SHA512: f88be011f1537af77e22307016f65edea2a24ba83f7f98942950f2417231a5d9bb114630072783d47336e10f9fbb1e59aa5858b716e4f247120252a78f7dbc1a
Homepage: https://github.com/alexdobin/STAR/
Description-en: ultrafast universal RNA-seq aligner
Spliced Transcripts Alignment to a Reference (STAR) software based on a
previously undescribed RNA-seq alignment algorithm that uses sequential
maximum mappable seed search in uncompressed suffix arrays followed by
seed clustering and stitching procedure. STAR outperforms other aligners
by a factor of >50 in mapping speed, aligning to the human genome 550
million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
while at the same time improving alignment sensitivity and precision. In
addition to unbiased de novo detection of canonical junctions, STAR can
discover non-canonical splices and chimeric (fusion) transcripts, and is
also capable of mapping full-length RNA sequences. Using Roche 454
sequencing of reverse transcription polymerase chain reaction amplicons,
the authors experimentally validated 1960 novel intergenic splice
junctions with an 80-90% success rate, corroborating the high precision
of the STAR mapping strategy.
Description-md5: c6dec2f618a2789f3d047717c690ae49