How to Install and Uninstall rna-star Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 06,2024

1. Install "rna-star" package

Please follow the steps below to install rna-star on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                rna-star
            
                    
    
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2. Uninstall "rna-star" package

Please follow the guidance below to uninstall rna-star on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                rna-star
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the rna-star package on Ubuntu 21.10 (Impish Indri)

Package: rna-star
Architecture: amd64
Version: 2.7.8a+dfsg-2
Built-Using: simde (= 0.7.2-4)
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 21881
Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.3.1), libhts3 (>= 1.10), libstdc++6 (>= 9)
Filename: pool/universe/r/rna-star/rna-star_2.7.8a+dfsg-2_amd64.deb
Size: 1242952
MD5sum: 4c4b704400a695fd06779999f02db32a
SHA1: 49df185d28c8640853d52ffcd3a7c19c76755aaf
SHA256: 372d3b486759b2f8d97e7488d3f548822996c8eb7a82a7832da2f208d7e1463c
SHA512: b4447d88ed0811a60da757bf4d04b770f4a76622246801486c271e6a04231b072125a96f8e8229c7314bd288387497b164f58936c6468d30f65c471da4023867
Homepage: https://github.com/alexdobin/STAR/
Description-en: ultrafast universal RNA-seq aligner
Spliced Transcripts Alignment to a Reference (STAR) software based on a
previously undescribed RNA-seq alignment algorithm that uses sequential
maximum mappable seed search in uncompressed suffix arrays followed by
seed clustering and stitching procedure. STAR outperforms other aligners
by a factor of >50 in mapping speed, aligning to the human genome 550
million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
while at the same time improving alignment sensitivity and precision. In
addition to unbiased de novo detection of canonical junctions, STAR can
discover non-canonical splices and chimeric (fusion) transcripts, and is
also capable of mapping full-length RNA sequences. Using Roche 454
sequencing of reverse transcription polymerase chain reaction amplicons,
the authors experimentally validated 1960 novel intergenic splice
junctions with an 80-90% success rate, corroborating the high precision
of the STAR mapping strategy.
Description-md5: c6dec2f618a2789f3d047717c690ae49