How to Install and Uninstall rna-star Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: November 22,2024

1. Install "rna-star" package

Please follow the guidance below to install rna-star on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                rna-star
            
                    
    
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2. Uninstall "rna-star" package

This guide let you learn how to uninstall rna-star on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                rna-star
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the rna-star package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: rna-star
Priority: optional
Section: universe/science
Installed-Size: 776
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 2.5.0a+dfsg-1
Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.3.1), libgomp1 (>= 4.9), libhts1 (>= 1.0), libstdc++6 (>= 5.2)
Filename: pool/universe/r/rna-star/rna-star_2.5.0a+dfsg-1_amd64.deb
Size: 347500
MD5sum: 2803706726262b3b7a82236705b78094
SHA1: a3210f97980827850c410835bbb463c29673a09a
SHA256: 9d6366926ae4f92b061a4150e8deb72edc54ff5d74a5c9f93cb1c949d2c20dd8
Description-en: ultrafast universal RNA-seq aligner
Spliced Transcripts Alignment to a Reference (STAR) software based on a
previously undescribed RNA-seq alignment algorithm that uses sequential
maximum mappable seed search in uncompressed suffix arrays followed by
seed clustering and stitching procedure. STAR outperforms other aligners
by a factor of >50 in mapping speed, aligning to the human genome 550
million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
while at the same time improving alignment sensitivity and precision. In
addition to unbiased de novo detection of canonical junctions, STAR can
discover non-canonical splices and chimeric (fusion) transcripts, and is
also capable of mapping full-length RNA sequences. Using Roche 454
sequencing of reverse transcription polymerase chain reaction amplicons,
the authors experimentally validated 1960 novel intergenic splice
junctions with an 80-90% success rate, corroborating the high precision
of the STAR mapping strategy.
Description-md5: c6dec2f618a2789f3d047717c690ae49
Homepage: https://code.google.com/p/rna-star/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu