How to Install and Uninstall salmon Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: April 29,2024

1. Install "salmon" package

In this section, we are going to explain the necessary steps to install salmon on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                salmon
            
                    
    
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2. Uninstall "salmon" package

This tutorial shows how to uninstall salmon on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                salmon
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the salmon package on Ubuntu 20.10 (Groovy Gorilla)

Package: salmon
Architecture: amd64
Version: 1.3.0+ds1-2
Built-Using: sphinx (= 2.4.3-4)
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 6962
Depends: libboost-filesystem1.71.0, libboost-iostreams1.71.0, libboost-program-options1.71.0, libc6 (>= 2.29), libgcc-s1 (>= 3.4), libjemalloc2 (>= 5.0.0), libstaden-read14 (>= 1.14.12), libstdc++6 (>= 9), libtbb2 (>= 2017~U7), zlib1g (>= 1:1.1.4), libjs-sphinxdoc (>= 1.0), sphinx-rtd-theme-common (>= 0.4.3+dfsg)
Filename: pool/universe/s/salmon/salmon_1.3.0+ds1-2_amd64.deb
Size: 1948904
MD5sum: c983438cd57db839b007104ead9b87a8
SHA1: 92b05a4db04c6683ceaec79a82597010b65ca81c
SHA256: f373bb6e96e50b16dd8d3fc5361edc1ca242d44410e29334eb286653724ea9db
SHA512: b59dcd6dc54d53d927d22a2aa6d0d638075818607fd3b8e1669056033b96476d2e902b0689179912da114badad54aced0fe63770d8ff8ed3d60e49bf31829f53
Homepage: https://github.com/COMBINE-lab/salmon
Description-en: wicked-fast transcript quantification from RNA-seq data
Salmon is a wicked-fast program to produce a highly-accurate, transcript-level
quantification estimates from RNA-seq data. Salmon achieves is accuracy and
speed via a number of different innovations, including the use of lightweight
alignments (accurate but fast-to-compute proxies for traditional read
alignments) and massively-parallel stochastic collapsed variational inference.
The result is a versatile tool that fits nicely into many different pipelines.
For example, you can choose to make use of the lightweight alignments by
providing Salmon with raw sequencing reads, or, if it is more convenient, you
can provide Salmon with regular alignments (e.g. computed with your favorite
aligner), and it will use the same wicked-fast, state-of-the-art inference
algorithm to estimate transcript-level abundances for your experiment.
Description-md5: 2d4c57b85c974a51ce828b2205df95e8