How to Install and Uninstall sambamba Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 22,2024

1. Install "sambamba" package

This guide let you learn how to install sambamba on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                sambamba
            
                    
    
    Copied

2. Uninstall "sambamba" package

Please follow the step by step instructions below to uninstall sambamba on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                sambamba
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the sambamba package on Ubuntu 20.10 (Groovy Gorilla)

Package: sambamba
Architecture: amd64
Version: 0.7.1-4
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 3305
Depends: libc6 (>= 2.15), libcurl4 (>= 7.18.0), libgcc-s1 (>= 3.0), liblz4-1 (>= 0.0~r127), liblzma5 (>= 5.1.1alpha+20120614), libphobos2-ldc-shared91 (>= 1:1.21.0), libssl1.1 (>= 1.1.0)
Filename: pool/universe/s/sambamba/sambamba_0.7.1-4_amd64.deb
Size: 863320
MD5sum: b4db019107e062de06acac4e18e58d7f
SHA1: cfca0e420c4356983b823938f32bb97cb164d0d1
SHA256: 1fb57f1a19d0b7f74e707d6d916f9c4019691cf4189db3b656d0112287f3fcd2
SHA512: 86fdc765463a44f9bd328e3a2c2eefa77f25129a0b270fd0ac255d4e4f7dbe80d529c128b5dd591fbd2fcaebbb3d3f4e81586ffbcce97ceeacbfd7d4943111d5
Homepage: https://github.com/lomereiter/sambamba
Description-en: tools for working with SAM/BAM data
Sambamba positions itself as a performant alternative
to samtools and provides tools for
* Powerful filtering with sambamba view --filter
* Picard-like SAM header merging in the merge tool
* Optional for operations on whole BAMs
* Fast copying of a region to a new file with the slice tool
* Duplicate marking/removal, using the Picard criteria
Description-md5: cffb799478d991a3e309bbae0c0e0b13