How to Install and Uninstall seqmagick Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 19,2024

1. Install "seqmagick" package

Here is a brief guide to show you how to install seqmagick on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                seqmagick
            
                    
    
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2. Uninstall "seqmagick" package

This is a short guide on how to uninstall seqmagick on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                seqmagick
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the seqmagick package on Ubuntu 20.10 (Groovy Gorilla)

Package: seqmagick
Architecture: all
Version: 0.8.0-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 223
Depends: python3-biopython, python3:any, python3-pygtrie
Filename: pool/universe/s/seqmagick/seqmagick_0.8.0-2_all.deb
Size: 39920
MD5sum: 2368f58ae4952d4158f4d75735fec701
SHA1: 405dfc913fe29da972ec672a8e4f9cc4cf0a86ec
SHA256: 17ca5b43d1aeadbd5bc8f2035282e69e878f524e3a3e8aa6350549bff2312c8f
SHA512: 8299f1968ad5cdabda61216a66c331a02679e2bce539d1829ade930158bc6b01a53433de414191ab2623cf9832ee1df04f750b32b9f01beba16175402dce10a0
Homepage: https://github.com/fhcrc/seqmagick/
Description-en: imagemagick-like frontend to Biopython SeqIO
Seqmagick is a little utility to expose the file format conversion
in BioPython in a convenient way.
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Features include:
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* Modifying sequences:
- Remove gaps
- Reverse & reverse complement
- Trim to a range of residues
- Change case
- Sort by length or ID
* Displaying information about sequence files
* Subsetting sequence files by:
- Position
- ID
- Deduplication
* Filtering sequences by quality score
* Trimming alignments to a region of interest defined by the forward
and reverse primers
Description-md5: e95ea82bff0bcb456ddd034e47497452