How to Install and Uninstall stacks Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: October 05,2024

1. Install "stacks" package

Please follow the steps below to install stacks on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                stacks
            
                    
    
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2. Uninstall "stacks" package

In this section, we are going to explain the necessary steps to uninstall stacks on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                stacks
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the stacks package on Ubuntu 20.10 (Groovy Gorilla)

Package: stacks
Architecture: amd64
Version: 2.53+dfsg-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 5545
Provides: stacks-web
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libhts3 (>= 1.10), libstdc++6 (>= 9), zlib1g (>= 1:1.2.6), samtools, libdbi-perl
Recommends: libspreadsheet-writeexcel-perl, python3, littler
Conflicts: stacks-web
Replaces: stacks-web
Filename: pool/universe/s/stacks/stacks_2.53+dfsg-1_amd64.deb
Size: 1050836
MD5sum: 1b71f28df96069d6e042392c44f885db
SHA1: 1793fba7ef191ab10b11f9a20ce3740d80aac0a9
SHA256: 18ce5e7fb0a604fad264f079875949222618eb9c12ce04f8c53e1651a6b04556
SHA512: d1902458d9e810e8f2676bef3a66f414735d03d59dcee249942aa426a3dd624aea4be8d7122edd30793406ec350add998a9503b4125509d1005a18102f21f9c5
Homepage: https://creskolab.uoregon.edu/stacks/
Description-en: pipeline for building loci from short-read DNA sequences
Stacks is a software pipeline for building loci from short-read sequences,
such as those generated on the Illumina platform. Stacks was developed to work
with restriction enzyme-based data, such as RAD-seq, for the purpose of
building genetic maps and conducting population genomics and phylogeography.
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Note that this package installs Stacks such that all commands must be run as:
$ stacks
Description-md5: 34654ddbf6119f78f131bb33b98f2f93