How to Install and Uninstall stacks Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 22,2024

1. Install "stacks" package

Please follow the steps below to install stacks on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                stacks
            
                    
    
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2. Uninstall "stacks" package

This guide covers the steps necessary to uninstall stacks on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                stacks
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the stacks package on Ubuntu 21.10 (Impish Indri)

Package: stacks
Architecture: amd64
Version: 2.55+dfsg-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 5503
Provides: stacks-web
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libhts3 (>= 1.10), libstdc++6 (>= 9), zlib1g (>= 1:1.2.6), samtools, libdbi-perl
Recommends: libspreadsheet-writeexcel-perl, python3, littler
Conflicts: stacks-web
Replaces: stacks-web
Filename: pool/universe/s/stacks/stacks_2.55+dfsg-1_amd64.deb
Size: 1038664
MD5sum: 68d4e408935e46c52b631c055c836aba
SHA1: 60398362c17c16098822b395d3f33c3421c00ad6
SHA256: 0d85db3e5bf52c6177fb06d1a85ccf7e5d1e12f2a3d80d5f1ac696700af50cbc
SHA512: 97351bb35c5b5a097320333fd64cf4795ae80fa0e1122e9f79bcd83758830d418d219f49b2048c695b2e2dc1131068b27d6bbe75470f844ce31dbab58818a5a4
Homepage: https://creskolab.uoregon.edu/stacks/
Description-en: pipeline for building loci from short-read DNA sequences
Stacks is a software pipeline for building loci from short-read sequences,
such as those generated on the Illumina platform. Stacks was developed to work
with restriction enzyme-based data, such as RAD-seq, for the purpose of
building genetic maps and conducting population genomics and phylogeography.
.
Note that this package installs Stacks such that all commands must be run as:
$ stacks
Description-md5: 34654ddbf6119f78f131bb33b98f2f93