How to Install and Uninstall stacks Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: November 22,2024

1. Install "stacks" package

This guide let you learn how to install stacks on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                stacks
            
                    
    
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2. Uninstall "stacks" package

This guide let you learn how to uninstall stacks on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                stacks
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the stacks package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: stacks
Priority: optional
Section: universe/science
Installed-Size: 3828
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 1.35-1ubuntu1
Depends: libc6 (>= 2.15), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.6), samtools, libdbi-perl
Recommends: libspreadsheet-writeexcel-perl
Filename: pool/universe/s/stacks/stacks_1.35-1ubuntu1_amd64.deb
Size: 739118
MD5sum: d776ae57b572ea04118681940f4703eb
SHA1: 5a87c20f81f5cfcb3f5befc23834b60cffea274a
SHA256: 96afa1896efbf9da9208f807affd52a4929fe8f08bd6c5aca7ede1a6ed2dab2d
Description-en: pipeline for building loci from short-read DNA sequences
Stacks is a software pipeline for building loci from short-read sequences,
such as those generated on the Illumina platform. Stacks was developed to work
with restriction enzyme-based data, such as RAD-seq, for the purpose of
building genetic maps and conducting population genomics and phylogeography.
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Note that this package installs Stacks such that all commands must be run as:
$ stacks
Description-md5: 34654ddbf6119f78f131bb33b98f2f93
Homepage: http://creskolab.uoregon.edu/stacks/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu