How to Install and Uninstall trf Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 22,2024

1. Install "trf" package

Learn how to install trf on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                trf
            
                    
    
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2. Uninstall "trf" package

This is a short guide on how to uninstall trf on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                trf
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the trf package on Ubuntu 20.10 (Groovy Gorilla)

Package: trf
Architecture: amd64
Version: 4.09.1-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 154
Depends: libc6 (>= 2.29)
Filename: pool/universe/t/trf/trf_4.09.1-3_amd64.deb
Size: 51000
MD5sum: f14a0165a5b5bfa1199a03bda3dc51f6
SHA1: 2d1ab86eda5da525fc61d2462d8012b05df59e28
SHA256: d1ea4970b8ccbe041579e8dce6595a7d3e59f40e7f3c3b15ec132046b28a1d02
SHA512: c09c32290e2d9d4f0bb2701d1e8d51f8e08b30b71e6b3185051c90cfc98a15471e2e36dae73ad26afe56e8d9c0e1d0c7e163d46c7372c1db30b06d6e9aa72322
Homepage: https://tandem.bu.edu/trf/trf.html
Description-en: locate and display tandem repeats in DNA sequences
A tandem repeat in DNA is two or more adjacent, approximate copies of a
pattern of nucleotides. Tandem Repeats Finder is a program to locate and
display tandem repeats in DNA sequences. In order to use the program,
the user submits a sequence in FASTA format. There is no need to specify
the pattern, the size of the pattern or any other parameter. The output
consists of two files: a repeat table file and an alignment file. The
repeat table, viewable in a web browser, contains information about each
repeat, including its location, size, number of copies and nucleotide
content. Clicking on the location indices for one of the table entries
opens a second browser page that shows an alignment of the copies
against a consensus pattern. The program is very fast, analyzing
sequences on the order of .5Mb in just a few seconds. Submitted
sequences may be of arbitrary length. Repeats with pattern size in the
range from 1 to 2000 bases are detected.
Description-md5: 87f63ef9c5602329d67d97936ba8134e