Complete Guide: Installing trf-examples on Ubuntu 20.10 (Groovy Gorilla) 2024

1. Install "trf-examples" package

This is a short guide on how to install trf-examples on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                trf-examples
            
                    
    
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2. Uninstall "trf-examples" package

This guide covers the steps necessary to uninstall trf-examples on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                trf-examples
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the trf-examples package on Ubuntu 20.10 (Groovy Gorilla)

Package: trf-examples
Architecture: all
Version: 4.09.1-3
Priority: optional
Section: universe/science
Source: trf
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 132
Enhances: trf
Filename: pool/universe/t/trf/trf-examples_4.09.1-3_all.deb
Size: 13984
MD5sum: 97cbd089b9d76e980c1557ad8ce9b94a
SHA1: 4d2222f11badcc80efa7259016c82f8b08d3b864
SHA256: c970b39f232fbe788938bb197ae1f8d86ba987ff3f18a600d486c720c7d2c4a8
SHA512: 45016ad035a4d24ff67864c0eaadf445db0a6f63f644d1a15d964ceed39673db204cbf1b5a25d4d1d36ebbfb4724e7962080ecda0c5c7c4a472472d20cc8ba64
Homepage: https://tandem.bu.edu/trf/trf.html
Description-en: locate and display tandem repeats in DNA sequences (examples)
A tandem repeat in DNA is two or more adjacent, approximate copies of a
pattern of nucleotides. Tandem Repeats Finder is a program to locate and
display tandem repeats in DNA sequences. In order to use the program,
the user submits a sequence in FASTA format. There is no need to specify
the pattern, the size of the pattern or any other parameter. The output
consists of two files: a repeat table file and an alignment file. The
repeat table, viewable in a web browser, contains information about each
repeat, including its location, size, number of copies and nucleotide
content. Clicking on the location indices for one of the table entries
opens a second browser page that shows an alignment of the copies
against a consensus pattern. The program is very fast, analyzing
sequences on the order of .5Mb in just a few seconds. Submitted
sequences may be of arbitrary length. Repeats with pattern size in the
range from 1 to 2000 bases are detected.
.
This package contains the example data for trf.
Description-md5: 4426967c117995062f90e208814b7255