Complete Guide: Installing trf on Ubuntu 21.10 (Impish Indri) 2024

1. Install "trf" package

Please follow the steps below to install trf on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                trf
            
                    
    
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2. Uninstall "trf" package

This guide let you learn how to uninstall trf on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                trf
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the trf package on Ubuntu 21.10 (Impish Indri)

Package: trf
Architecture: amd64
Version: 4.09.1-4
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 162
Depends: libc6 (>= 2.29)
Filename: pool/universe/t/trf/trf_4.09.1-4_amd64.deb
Size: 53168
MD5sum: ca166452715b968f396c68ed6f250fca
SHA1: b3f09a1b9fa718668effd64b78dc65d3240afd4f
SHA256: e7b6a99ed68300aca041d5144f7a7da21ae5c3ca1d7c7bc17f7bcfac75fe3e28
SHA512: 41ab99d9e6534022a6283357b3cbd86c956716c173e4e0e182c4485dd2c8b658ebb9acb7d5942dbc0c2810dd89083310a8b2e335dd64987c6ef9a9b967d6d027
Homepage: https://tandem.bu.edu/trf/trf.html
Description-en: locate and display tandem repeats in DNA sequences
A tandem repeat in DNA is two or more adjacent, approximate copies of a
pattern of nucleotides. Tandem Repeats Finder is a program to locate and
display tandem repeats in DNA sequences. In order to use the program,
the user submits a sequence in FASTA format. There is no need to specify
the pattern, the size of the pattern or any other parameter. The output
consists of two files: a repeat table file and an alignment file. The
repeat table, viewable in a web browser, contains information about each
repeat, including its location, size, number of copies and nucleotide
content. Clicking on the location indices for one of the table entries
opens a second browser page that shows an alignment of the copies
against a consensus pattern. The program is very fast, analyzing
sequences on the order of .5Mb in just a few seconds. Submitted
sequences may be of arbitrary length. Repeats with pattern size in the
range from 1 to 2000 bases are detected.
Description-md5: 87f63ef9c5602329d67d97936ba8134e