Complete Guide: Installing trf-examples on Ubuntu 21.10 (Impish Indri) 2024

1. Install "trf-examples" package

In this section, we are going to explain the necessary steps to install trf-examples on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                trf-examples
            
                    
    
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2. Uninstall "trf-examples" package

In this section, we are going to explain the necessary steps to uninstall trf-examples on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                trf-examples
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the trf-examples package on Ubuntu 21.10 (Impish Indri)

Package: trf-examples
Architecture: all
Version: 4.09.1-4
Priority: optional
Section: universe/science
Source: trf
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 132
Enhances: trf
Filename: pool/universe/t/trf/trf-examples_4.09.1-4_all.deb
Size: 14076
MD5sum: 2df4746252233971e4ff9ce15804dacd
SHA1: 300ad6cb16db2c93b35e1acb4497e3d34ec53c74
SHA256: e5844c63a5937260d304df78b84455d6b7d948c68cac41bb43365cf9ef20b330
SHA512: faa5b9420872e1a1867e548ca12d7bdd1721c20a3254d12b2e369af90a35f0cc4840ca25ac6723992ce6c3613de2dba0caefdaab460b473eee4212965a9cf1c0
Homepage: https://tandem.bu.edu/trf/trf.html
Description-en: locate and display tandem repeats in DNA sequences (examples)
A tandem repeat in DNA is two or more adjacent, approximate copies of a
pattern of nucleotides. Tandem Repeats Finder is a program to locate and
display tandem repeats in DNA sequences. In order to use the program,
the user submits a sequence in FASTA format. There is no need to specify
the pattern, the size of the pattern or any other parameter. The output
consists of two files: a repeat table file and an alignment file. The
repeat table, viewable in a web browser, contains information about each
repeat, including its location, size, number of copies and nucleotide
content. Clicking on the location indices for one of the table entries
opens a second browser page that shows an alignment of the copies
against a consensus pattern. The program is very fast, analyzing
sequences on the order of .5Mb in just a few seconds. Submitted
sequences may be of arbitrary length. Repeats with pattern size in the
range from 1 to 2000 bases are detected.
.
This package contains the example data for trf.
Description-md5: 4426967c117995062f90e208814b7255