How to Install and Uninstall vdjtools Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 18,2024

1. Install "vdjtools" package

Learn how to install vdjtools on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                vdjtools
            
                    
    
    Copied

2. Uninstall "vdjtools" package

Here is a brief guide to show you how to uninstall vdjtools on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                vdjtools
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the vdjtools package on Ubuntu 20.10 (Groovy Gorilla)

Package: vdjtools
Architecture: all
Version: 1.2.1+git20190311-1
Priority: optional
Section: multiverse/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Java Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 13
Depends: libvdjtools-java
Recommends: r-cran-ape, r-cran-ggplot2, r-cran-gplots, r-cran-mass, r-cran-plotrix, r-cran-rcolorbrewer, r-cran-reshape, r-cran-reshape2, r-cran-scales, r-cran-gridbase, r-cran-gridextra, r-cran-circlize, r-cran-venndiagram, r-cran-ffield
Filename: pool/multiverse/v/vdjtools/vdjtools_1.2.1+git20190311-1_all.deb
Size: 2756
MD5sum: c7a10ec90262e8fdc809a10bbd4b01fc
SHA1: c43166bf1c92173d6141162d70d196a38871c8d0
SHA256: b79df55ce90e3128ef039ac01d5a8d503f88f3b87d6b2a619a63f380b3f3d80d
SHA512: cfc747e4e97d7b34d0bcbe73a7c25aa56ac4c09ddf6a6e93d5b73817aa1026280405cc2369c2fc5721831a0ba9d5b1198b4440b0967299c3305ef73db8005a4b
Homepage: http://maven.apache.org
Description-en: framework for post-analysis of B/T cell repertoires
VDJtools is an open-source Java/Groovy-based framework designed
to facilitate analysis of immune repertoire sequencing (RepSeq)
data. VDJtools computes a wide set of statistics and is able to perform
various forms of cross-sample analysis. Both comprehensive tabular
output and publication-ready plots are provided.
.
The main aims of the VDJtools Project are:
.
* To ensure consistency between post-analysis methods and results
* To save the time of bioinformaticians analyzing RepSeq data
* To create an API framework facilitating development of new RepSeq
analysis applications
* To provide a simple enough command line tool so it could be used by
immunologists and biologists with little computational background
Description-md5: 847526ddf264ff5fe4eb08d70a31d79e