How to Install and Uninstall vdjtools Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 19,2024

1. Install "vdjtools" package

This tutorial shows how to install vdjtools on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                vdjtools
            
                    
    
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2. Uninstall "vdjtools" package

Please follow the instructions below to uninstall vdjtools on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                vdjtools
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the vdjtools package on Ubuntu 21.10 (Impish Indri)

Package: vdjtools
Architecture: all
Version: 1.2.1+git20190311-5
Priority: optional
Section: multiverse/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 52
Depends: libvdjtools-java, default-jre | java-runtime
Recommends: r-cran-ape, r-cran-ggplot2, r-cran-gplots, r-cran-mass, r-cran-plotrix, r-cran-rcolorbrewer, r-cran-reshape, r-cran-reshape2, r-cran-scales, r-cran-gridbase, r-cran-gridextra, r-cran-circlize, r-cran-venndiagram, r-cran-ffield
Filename: pool/multiverse/v/vdjtools/vdjtools_1.2.1+git20190311-5_all.deb
Size: 41628
MD5sum: 1b7e9c6c246ab24ebaf0b6ebc1df767e
SHA1: ec35be68a732033ddc26f9288757ce39e6105a28
SHA256: 67a7a53f0456204132d0d1c9223bb9bd5ce73e2aa3e4247d64e795e00eb5125d
SHA512: 789a74b02da7eaabe385a29d26f3f56998fc39a7d47602e7f81a7e7ce57fdb3556dda1f3466f2f672e77419f8b2c31e3f02ecf07c41d6f5509c8f8f7d6c7db54
Homepage: https://github.com/mikessh/vdjtools
Description-en: framework for post-analysis of B/T cell repertoires
VDJtools is an open-source Java/Groovy-based framework designed
to facilitate analysis of immune repertoire sequencing (RepSeq)
data. VDJtools computes a wide set of statistics and is able to perform
various forms of cross-sample analysis. Both comprehensive tabular
output and publication-ready plots are provided.
.
The main aims of the VDJtools Project are:
.
* To ensure consistency between post-analysis methods and results
* To save the time of bioinformaticians analyzing RepSeq data
* To create an API framework facilitating development of new RepSeq
analysis applications
* To provide a simple enough command line tool so it could be used by
immunologists and biologists with little computational background
Description-md5: 847526ddf264ff5fe4eb08d70a31d79e