Complete Guide: Installing yanosim on Ubuntu 20.10 (Groovy Gorilla) 2024

1. Install "yanosim" package

This tutorial shows how to install yanosim on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                yanosim
            
                    
    
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2. Uninstall "yanosim" package

Please follow the step by step instructions below to uninstall yanosim on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                yanosim
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the yanosim package on Ubuntu 20.10 (Groovy Gorilla)

Package: yanosim
Architecture: amd64
Version: 0.1-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 45
Depends: python3-click, python3-numpy, python3-pysam, python3-scipy, python3:any
Filename: pool/universe/y/yanosim/yanosim_0.1-3_amd64.deb
Size: 9392
MD5sum: e9ecf47132e1af54a27f7824668b8e8d
SHA1: 8a67d3bbdc933d441754df8e3a05a3565de238da
SHA256: c295ce36ddbfd87018f32b6e29d241128f92360a0b05bf1dc13eab35d6d9ed4f
SHA512: 624381e648095573e51d60c0e17181bb8f3aae67f48d0346d4561288bb615961e961e77ab2e30a6bdfb9cacf5f1ed940901b4a0790c0c134c5d271360c738861
Homepage: https://github.com/bartongroup/yanosim
Description-en: read simulator nanopore DRS datasets
Yanosim has three options:
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1. yanosim model:
Creates an model of mismatches, insertions and deletions
based on an alignment of nanopore DRS reads to a
reference. Reads should be aligned to a transcriptome
i.e. without spliced alignment, using minimap2. They
should have the cs tag.
2. yanosim quantify:
Quantify the number of reads mapping to each
transcript in a reference, so that the right number
of reads can be simulated.
3. yanosim simulate:
Given a model created using yanosim model, and
per-transcript read counts created using yanosim
simulate, simulate error-prone long-reads from the
given fasta file.
Description-md5: 768d65e784fd636a7b80a25948a82fa0