How to Install and Uninstall bbmap Package on Ubuntu 21.04 (Hirsute Hippo)

Last updated: November 22,2024

1. Install "bbmap" package

Please follow the steps below to install bbmap on Ubuntu 21.04 (Hirsute Hippo)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                bbmap
            
                    
    
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2. Uninstall "bbmap" package

Please follow the step by step instructions below to uninstall bbmap on Ubuntu 21.04 (Hirsute Hippo):


    
        
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                sudo apt remove
            
                        
                bbmap
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the bbmap package on Ubuntu 21.04 (Hirsute Hippo)

Package: bbmap
Architecture: all
Version: 38.90+dfsg-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 6138
Depends: libmpj-java
Recommends: pigz
Filename: pool/universe/b/bbmap/bbmap_38.90+dfsg-1_all.deb
Size: 5408828
MD5sum: 8b5a44d510b11272b3bea42b4180b027
SHA1: fce58fdc21cd193110101779202c5becf17160aa
SHA256: 44ee477108ddeb5081f92dd4063addb754f9f98c0528b06f7de0e99a6115aa0c
SHA512: 5c94a93f6cee8bc9ebdbdcc4c1aeaeece45107b9b0a3fc028de04b8130b8bf4c2f28eef009e4968bcecfbb5a88421fcdce55930911b8ea6e021a21b7aaa0233e
Homepage: https://sourceforge.net/projects/bbmap/
Description-en: short read aligner and other bioinformatic tools
BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling
arbitrarily large genomes with millions of scaffolds. Handles Illumina,
PacBio, 454, and other reads; very high sensitivity and tolerant of
errors and numerous large indels.
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BBMap is multithreaded as well as the other tools bundled into this
package for instance:
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BBNorm: Kmer-based error-correction and normalization tool.
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Dedupe: Simplifies assemblies by removing duplicate or contained
subsequences that share a target percent identity.
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Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam,
interleaved/paired, and ASCII-33/64, at over 500 MB/s.
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BBDuk: Filters, trims, or masks reads with kmer matches to an
artifact/contaminant file.
Description-md5: b5833726e45421cf74f3885c83040a6f