How to Install and Uninstall ivar-doc Package on Ubuntu 21.04 (Hirsute Hippo)

Last updated: May 18,2024

1. Install "ivar-doc" package

In this section, we are going to explain the necessary steps to install ivar-doc on Ubuntu 21.04 (Hirsute Hippo)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                ivar-doc
            
                    
    
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2. Uninstall "ivar-doc" package

Please follow the guidance below to uninstall ivar-doc on Ubuntu 21.04 (Hirsute Hippo):


    
        
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                sudo apt remove
            
                        
                ivar-doc
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the ivar-doc package on Ubuntu 21.04 (Hirsute Hippo)

Package: ivar-doc
Architecture: all
Version: 1.3+dfsg-1
Priority: optional
Section: universe/doc
Source: ivar
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1130
Depends: node-jquery
Filename: pool/universe/i/ivar/ivar-doc_1.3+dfsg-1_all.deb
Size: 244596
MD5sum: ee4f2e632315225c6c47973388a3d9a3
SHA1: ef1b3068966202fdec1fd34675cb691b57e6ba6b
SHA256: d6e463d2597dd3d5d58fa5113927c852391811a4486ea67e065fd1beb0128b5f
SHA512: 95ff7dc9b47672ca788676fe287b820d9f619b7467f737e31500215e2fdd066103934b7f65f965a8e62e3094c5054bca9c1805f7af99b4594c195a8a9374f65f
Homepage: https://github.com/andersen-lab/ivar
Description-en: functions broadly useful for viral amplicon-based sequencing (documentation)
iVar is a computational package that contains functions broadly useful
for viral amplicon-based sequencing. Additional tools for metagenomic
sequencing are actively being incorporated into iVar. While each of
these functions can be accomplished using existing tools, iVar contains
an intersection of functionality from multiple tools that are required
to call iSNVs and consensus sequences from viral sequencing data across
multiple replicates. iVar provided the following functions:
.
1. trimming of primers and low-quality bases,
2. consensus calling,
3. variant calling - both iSNVs and insertions/deletions, and
4. identifying mismatches to primer sequences and excluding the
corresponding reads from alignment files.
.
This package contains the html documentation for ivar.
Description-md5: 736ba4389df927a42fc4994f365e6b43