How to Install and Uninstall ivar-doc Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 23,2024

1. Install "ivar-doc" package

Learn how to install ivar-doc on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                ivar-doc
            
                    
    
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2. Uninstall "ivar-doc" package

Please follow the instructions below to uninstall ivar-doc on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                ivar-doc
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the ivar-doc package on Ubuntu 20.10 (Groovy Gorilla)

Package: ivar-doc
Architecture: all
Version: 1.2.2+dfsg-3
Priority: optional
Section: universe/doc
Source: ivar
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 972
Depends: node-jquery
Filename: pool/universe/i/ivar/ivar-doc_1.2.2+dfsg-3_all.deb
Size: 85204
MD5sum: 5b1f9145594d84f7680ea8be83472889
SHA1: a8e8ef031e1f51b9189126df167505a599ac6de9
SHA256: 0e58eebcc0ac3e88ce5c20fce3a4577779f573ced79ddd131225101190e36e83
SHA512: e8cba86f7954504316ccb73103e3d3cbd2a845c06064ad270fd851f17c3064857dbaaee71e0ac4af723bf468fba01788ca9fa6c5839b0cfd4b8eb0b2714be1d1
Homepage: https://github.com/andersen-lab/ivar
Description-en: functions broadly useful for viral amplicon-based sequencing (documentation)
iVar is a computational package that contains functions broadly useful
for viral amplicon-based sequencing. Additional tools for metagenomic
sequencing are actively being incorporated into iVar. While each of
these functions can be accomplished using existing tools, iVar contains
an intersection of functionality from multiple tools that are required
to call iSNVs and consensus sequences from viral sequencing data across
multiple replicates. iVar provided the following functions:
.
1. trimming of primers and low-quality bases,
2. consensus calling,
3. variant calling - both iSNVs and insertions/deletions, and
4. identifying mismatches to primer sequences and excluding the
corresponding reads from alignment files.
.
This package contains the html documentation for ivar.
Description-md5: 736ba4389df927a42fc4994f365e6b43