How to Install and Uninstall jellyfish-examples Package on Ubuntu 21.04 (Hirsute Hippo)

Last updated: December 23,2024

1. Install "jellyfish-examples" package

This guide covers the steps necessary to install jellyfish-examples on Ubuntu 21.04 (Hirsute Hippo)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                jellyfish-examples
            
                    
    
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2. Uninstall "jellyfish-examples" package

Learn how to uninstall jellyfish-examples on Ubuntu 21.04 (Hirsute Hippo):


    
        
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                sudo apt remove
            
                        
                jellyfish-examples
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the jellyfish-examples package on Ubuntu 21.04 (Hirsute Hippo)

Package: jellyfish-examples
Architecture: all
Version: 2.3.0-9
Priority: optional
Section: universe/science
Source: jellyfish
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 63
Recommends: jellyfish
Filename: pool/universe/j/jellyfish/jellyfish-examples_2.3.0-9_all.deb
Size: 12256
MD5sum: 9cc7f656caa330d2e6655a397c0292cc
SHA1: 557f509a6ca6d1821a6a5ac6087e2108997412bf
SHA256: 6a78f10dbff724ca2eb633fd1dac80728eb92a3cfd072efa00c97695ef22e8e5
SHA512: af96ddc6930dcc2133c9f0ddacb1df6bcb1002d590d2e92ec6bd908b16927024de8adfff6b347131cc2aa9ede2d2e31aaa5c26bf5bfe11e700e20022db8ba917
Homepage: https://www.cbcb.umd.edu/software/jellyfish/
Description-en: count k-mers in DNA sequences (examples for testing)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains examples to test the package
Description-md5: 70cd6238484ba024b031a85b283b1b27