How to Install and Uninstall jellyfish-examples Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 22,2024

1. Install "jellyfish-examples" package

This is a short guide on how to install jellyfish-examples on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                jellyfish-examples
            
                    
    
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2. Uninstall "jellyfish-examples" package

Please follow the guidance below to uninstall jellyfish-examples on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                jellyfish-examples
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the jellyfish-examples package on Ubuntu 20.10 (Groovy Gorilla)

Package: jellyfish-examples
Architecture: all
Version: 2.3.0-6
Priority: optional
Section: universe/science
Source: jellyfish
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 2255
Depends: jellyfish, libc6 (>= 2.29), libgcc-s1 (>= 3.0), libhts3 (>= 1.10), libjellyfish-2.0-2 (>= 2.3.0), libstdc++6 (>= 9)
Filename: pool/universe/j/jellyfish/jellyfish-examples_2.3.0-6_all.deb
Size: 569676
MD5sum: d06551bf954db3cd681cf625db68e5dd
SHA1: 71b4921eb977e4113e803aaa42c1a537935d8ba6
SHA256: ca2aa6f528b859e3dfd4aaecd1ed0d8db57625735aa9ff7c47e9c774ec3d2bbd
SHA512: 8feedb1f86ecbd6f62aff5023c2b47978c4d30defa3f72c31c867e8ff8d0caccc6dc45a9591a039be56eb71a88f0ca19299df80b8c46d2c258409e03de39e92c
Homepage: https://www.cbcb.umd.edu/software/jellyfish/
Description-en: count k-mers in DNA sequences (examples for testing)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains examples to test the package
Description-md5: 70cd6238484ba024b031a85b283b1b27