How to Install and Uninstall bali-phy Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 23,2024

1. Install "bali-phy" package

This is a short guide on how to install bali-phy on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                bali-phy
            
                    
    
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2. Uninstall "bali-phy" package

This guide covers the steps necessary to uninstall bali-phy on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                bali-phy
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the bali-phy package on Ubuntu 21.10 (Impish Indri)

Package: bali-phy
Architecture: amd64
Version: 3.6.0+dfsg-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 36114
Depends: libboost-chrono1.74.0 (>= 1.74.0), libboost-filesystem1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libboost-random1.74.0 (>= 1.74.0), libc6 (>= 2.29), libcairo2 (>= 1.4.10), libgcc-s1 (>= 3.4), libstdc++6 (>= 9), perl:any, python3
Recommends: r-base, gnuplot
Suggests: figtree, seaview
Filename: pool/universe/b/bali-phy/bali-phy_3.6.0+dfsg-1_amd64.deb
Size: 6241724
MD5sum: 586efc1cbadd9e91d4dc517ef9b38a1e
SHA1: 876ec1e8866f1481569737b8b908745a5015c21d
SHA256: c5109c84de6fd5b9e6a976e887cf04c5ecf6e176e5f11a89e6c3bb95c32e70d9
SHA512: 958ca5bb01b460346629a3b3d65b42af55460fe8e18ce8acc74d5e6e78aa847c7c474748f6a65cdb035ce23b071b4c539c261d29f0892eab93c0e735c5af3467
Homepage: http://www.bali-phy.org
Description-en: Bayesian Inference of Alignment and Phylogeny
BAli-Phy estimates multiple sequence alignments and evolutionary trees
from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC
to estimate evolutionary trees, positive selection, and branch lengths
while averaging over alternative alignments. BAli-Phy can display
alignment ambiguity graphically in an alignment uncertainty (AU) plot.
.
BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes
and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically
estimates relative rates for each gene.
Description-md5: d67566c758d777cfb87f8ae861258ecb