How to Install and Uninstall bio-eagle Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 24,2024

1. Install "bio-eagle" package

This guide covers the steps necessary to install bio-eagle on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                bio-eagle
            
                    
    
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2. Uninstall "bio-eagle" package

This guide let you learn how to uninstall bio-eagle on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                bio-eagle
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the bio-eagle package on Ubuntu 21.10 (Impish Indri)

Package: bio-eagle
Architecture: amd64
Version: 2.4.1-3build1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 630
Depends: libboost-iostreams1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libhts3 (>= 1.10), libopenblas0, libstdc++6 (>= 5.2)
Recommends: med-config (>= 2.1)
Suggests: bio-eagle-examples
Filename: pool/universe/b/bio-eagle/bio-eagle_2.4.1-3build1_amd64.deb
Size: 222452
MD5sum: ebb20761194429f0bd428fd491c4ff0a
SHA1: 4df5646ff45840fa1a260cdcb1ea7b8c4799c1a0
SHA256: 99c616056716990f9d93759347b067e598d0e31b1d690a8d255b864515432764
SHA512: b3cc53bb7b50760ccab32f2e47f84aa653f840b785d2ae22ef5ca17160be3c13fdcfb857ffd2992fcd1cac7ab9962f1466111ab497d57f9a093dbb4d467b2b6e
Homepage: https://data.broadinstitute.org/alkesgroup/Eagle/
Description-en: Haplotype phasing within a genotyped cohort or using a phased reference panel
Eagle estimates haplotype phase either within a genotyped cohort or using a
phased reference panel. The basic idea of the Eagle1 algorithm is to harness
identity-by-descent among distant relatives—which is pervasive at very large
sample sizes but rare among smaller numbers of samples—to rapidly call phase
using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a
full probabilistic model similar to the diploid Li-Stephens model used by
previous HMM-based methods.
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Please note: The executable was renamed to bio-eagle because of a name clash.
Please read more about this in /usr/share/doc/bio-eagle/README.Debian.
Description-md5: ea6e8307bcd12f756aab2c02e5d41b0e