How to Install and Uninstall ivar Package on Ubuntu 21.10 (Impish Indri)

Last updated: March 15,2025

1. Install "ivar" package

Please follow the step by step instructions below to install ivar on Ubuntu 21.10 (Impish Indri)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                ivar
            
                    
    
    Copied

2. Uninstall "ivar" package

In this section, we are going to explain the necessary steps to uninstall ivar on Ubuntu 21.10 (Impish Indri):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                ivar
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the ivar package on Ubuntu 21.10 (Impish Indri)

Package: ivar
Architecture: amd64
Version: 1.3.1+dfsg-4
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1407
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libhts3 (>= 1.10), libstdc++6 (>= 11)
Recommends: samtools
Filename: pool/universe/i/ivar/ivar_1.3.1+dfsg-4_amd64.deb
Size: 206034
MD5sum: d5f123b487a6349fabe7613722989fcb
SHA1: 7d1bcbca788b8e8cd2c35dae9ef721d7a2d1e5c8
SHA256: 3d2b9ddd9683abf10899faffa64208e0feff392f7791b054d7ca88cb5c5904f4
SHA512: de0d35249bbd651b52f3d4d9c24aef1ccf702f05db5abea7af60ca2142b49e2c7b0ae25ba5c5be1d36193a2a5b290afe3b55286d09f91a552299193743461a85
Homepage: https://github.com/andersen-lab/ivar
Description-en: functions broadly useful for viral amplicon-based sequencing
iVar is a computational package that contains functions broadly useful
for viral amplicon-based sequencing. Additional tools for metagenomic
sequencing are actively being incorporated into iVar. While each of
these functions can be accomplished using existing tools, iVar contains
an intersection of functionality from multiple tools that are required
to call iSNVs and consensus sequences from viral sequencing data across
multiple replicates. iVar provided the following functions:
.
1. trimming of primers and low-quality bases,
2. consensus calling,
3. variant calling - both iSNVs and insertions/deletions, and
4. identifying mismatches to primer sequences and excluding the
corresponding reads from alignment files.
Description-md5: 0e23cb2ef34819e99960031f64b21c00