How to Install and Uninstall jellyfish1 Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 07,2024

1. Install "jellyfish1" package

This guide covers the steps necessary to install jellyfish1 on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                jellyfish1
            
                    
    
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2. Uninstall "jellyfish1" package

Please follow the guidelines below to uninstall jellyfish1 on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                jellyfish1
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the jellyfish1 package on Ubuntu 21.10 (Impish Indri)

Package: jellyfish1
Architecture: amd64
Version: 1.1.11-5
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 664
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 9)
Enhances: kraken
Filename: pool/universe/j/jellyfish1/jellyfish1_1.1.11-5_amd64.deb
Size: 139360
MD5sum: 64efeeb8c5acddcdd5d8d64f24ac1673
SHA1: 6ade8b270a1661eaaba6b8829c4997940c74dd1c
SHA256: dd8e0c6485133a4361907b2a5773ec79e5173478458e9ff614074825019a30ea
SHA512: fd84b6a4ab66bf3b658ab9ecfd8dbd6f1839458bce74e3a77e166f670c12310c9c38e8c9f69a47d4617f2404e52aa49013fa2cffbab769e646499d52cee33d72
Homepage: https://www.cbcb.umd.edu/software/jellyfish/
Description-en: count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This is the latest version of the 1.x series of jellyfish which is
used by some other applications that are not compatible with version
2.x which is provided inside the jellyfish package.
Description-md5: e6c6a2a63227c526113a1ef4decae328