How to Install and Uninstall jellyfish1 Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 20,2024

1. Install "jellyfish1" package

Please follow the step by step instructions below to install jellyfish1 on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                jellyfish1
            
                    
    
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2. Uninstall "jellyfish1" package

This guide covers the steps necessary to uninstall jellyfish1 on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                jellyfish1
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the jellyfish1 package on Ubuntu 20.10 (Groovy Gorilla)

Package: jellyfish1
Architecture: amd64
Version: 1.1.11-4build1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 684
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 9)
Enhances: kraken
Filename: pool/universe/j/jellyfish1/jellyfish1_1.1.11-4build1_amd64.deb
Size: 144296
MD5sum: 883747265fca0c37538013fe201d995f
SHA1: 10deb50e14532b8c51a2f2b493c249de9f2df48b
SHA256: 7dea296aac996b669b1e4f294554c050dd4b398cd587ee825b14a1268a32172a
SHA512: 86c980eaed6ed4a4f81ab2dce6681fec4f27cc132c4e2e9c868bfdd5a5524a8e5ce7f91fa8feff1c52e17cc1a33ce67d404f4e8c3f99f0e1c070b9a344d11fbd
Homepage: http://www.cbcb.umd.edu/software/jellyfish/
Description-en: count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This is the latest version of the 1.x series of jellyfish which is
used by some other applications that are not compatible with version
2.x which is provided inside the jellyfish package.
Description-md5: e6c6a2a63227c526113a1ef4decae328