How to Install and Uninstall kaptive-data Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 26,2024

1. Install "kaptive-data" package

Here is a brief guide to show you how to install kaptive-data on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                kaptive-data
            
                    
    
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2. Uninstall "kaptive-data" package

This guide covers the steps necessary to uninstall kaptive-data on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                kaptive-data
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the kaptive-data package on Ubuntu 21.10 (Impish Indri)

Package: kaptive-data
Architecture: all
Version: 0.7.3-3
Priority: optional
Section: universe/science
Source: kaptive
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 13821
Enhances: kaptive
Filename: pool/universe/k/kaptive/kaptive-data_0.7.3-3_all.deb
Size: 1943576
MD5sum: 8ac81a712f4dc39f862fcdb3945b7c6f
SHA1: 4353a536a6efd73227ce20235f80a4881d8eeb9e
SHA256: 26a69b93ceacfef7ac744b3417b24add4ee59b4cbefd2e558c4793740672329f
SHA512: 0a90418d636320200a47e30313ac23c3c331019de954f037e5d9a0e2ec804e53ca1c6d6d6a2cc1adde28c9d991465b86bcdac172426519ae8be34a2f103208c9
Homepage: https://github.com/katholt/Kaptive
Description-en: reference data for kaptive for Klebsiella genome assemblies
Kaptive reports information about K and O types for Klebsiella genome
assemblies.
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Given a novel genome and a database of known loci (K or O), Kaptive will
help a user to decide whether their sample has a known or novel locus.
It carries out the following for each input assembly:
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* BLAST for all known locus nucleotide sequences (using blastn) to
identify the best match ('best' defined as having the highest
coverage).
* Extract the region(s) of the assembly which correspond to the BLAST
hits (i.e. the locus sequence in the assembly) and save it to a
FASTA file.
* BLAST for all known locus genes (using tblastn) to identify which
expected genes (genes in the best matching locus) are present/missing
and whether any unexpected genes (genes from other loci) are present.
* Output a summary to a table file.
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In cases where your input assembly closely matches a known locus,
Kaptive should make that obvious. When your assembly has a novel type,
that too should be clear. However, Kaptive cannot reliably extract or
annotate locus sequences for totally novel types - if it indicates a
novel locus is present then extracting and annotating the sequence is up
to you! Very poor assemblies can confound the results, so be sure to
closely examine any case where the locus sequence in your assembly is
broken into multiple pieces.
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This package contains a reference database. Its not necessarily used
to run kaptive since you can use your own database.
Description-md5: 91d426d8e3ef447d958962fa9c2a2384