How to Install and Uninstall kaptive-data Package on Ubuntu 21.04 (Hirsute Hippo)

Last updated: May 13,2024

1. Install "kaptive-data" package

Please follow the step by step instructions below to install kaptive-data on Ubuntu 21.04 (Hirsute Hippo)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                kaptive-data
            
                    
    
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2. Uninstall "kaptive-data" package

This guide let you learn how to uninstall kaptive-data on Ubuntu 21.04 (Hirsute Hippo):


    
        
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                sudo apt remove
            
                        
                kaptive-data
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the kaptive-data package on Ubuntu 21.04 (Hirsute Hippo)

Package: kaptive-data
Architecture: all
Version: 0.7.3-1
Priority: optional
Section: universe/science
Source: kaptive
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 13821
Enhances: kaptive
Filename: pool/universe/k/kaptive/kaptive-data_0.7.3-1_all.deb
Size: 1944160
MD5sum: 6161ecfdfd4ba3206d4baa7deeb82dfa
SHA1: b2fbf2428a1456288f545be1c5a181684d93cf6a
SHA256: 03ed7de4282243b038cafb713916a350f098ba1189ea3f22042c3d43d08f0150
SHA512: b4bfcbe7ee5cfa98dd567a0fe263bafe83a749b0fdc67cc22b56c4b732113b5cd321d1eb5a904aebbcfc0c06181c35eb82e2222ec80d2c8c56ca1ba7a5207385
Homepage: https://github.com/katholt/Kaptive
Description-en: reference data for kaptive for Klebsiella genome assemblies
Kaptive reports information about K and O types for Klebsiella genome
assemblies.
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Given a novel genome and a database of known loci (K or O), Kaptive will
help a user to decide whether their sample has a known or novel locus.
It carries out the following for each input assembly:
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* BLAST for all known locus nucleotide sequences (using blastn) to
identify the best match ('best' defined as having the highest
coverage).
* Extract the region(s) of the assembly which correspond to the BLAST
hits (i.e. the locus sequence in the assembly) and save it to a
FASTA file.
* BLAST for all known locus genes (using tblastn) to identify which
expected genes (genes in the best matching locus) are present/missing
and whether any unexpected genes (genes from other loci) are present.
* Output a summary to a table file.
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In cases where your input assembly closely matches a known locus,
Kaptive should make that obvious. When your assembly has a novel type,
that too should be clear. However, Kaptive cannot reliably extract or
annotate locus sequences for totally novel types - if it indicates a
novel locus is present then extracting and annotating the sequence is up
to you! Very poor assemblies can confound the results, so be sure to
closely examine any case where the locus sequence in your assembly is
broken into multiple pieces.
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This package contains a reference database. Its not necessarily used
to run kaptive since you can use your own database.
Description-md5: 91d426d8e3ef447d958962fa9c2a2384