How to Install and Uninstall kaptive-data Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 12,2024

1. Install "kaptive-data" package

This guide let you learn how to install kaptive-data on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                kaptive-data
            
                    
    
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2. Uninstall "kaptive-data" package

Please follow the steps below to uninstall kaptive-data on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                kaptive-data
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the kaptive-data package on Ubuntu 20.10 (Groovy Gorilla)

Package: kaptive-data
Architecture: all
Version: 0.7.0-2
Priority: optional
Section: universe/science
Source: kaptive
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 13542
Enhances: kaptive
Filename: pool/universe/k/kaptive/kaptive-data_0.7.0-2_all.deb
Size: 1906524
MD5sum: 64187e916e02e5d8ad012eb72915122c
SHA1: 3b5b218917d27f763a10bac56ccb2a57ba04e64a
SHA256: 53bca7b4220d9b22669fe2f8545f2afa6a5b186d4be94c9276b3af91cd272ea6
SHA512: 648ba643bd6401851615ecabc295141f103966a1ad965cd2dc91ec562a5b24cf244d719558185ef4f2455a7262a8d849cc3fddda097efa71d98fbf1f7758a79d
Homepage: https://github.com/katholt/Kaptive
Description-en: reference data for kaptive for Klebsiella genome assemblies
Kaptive reports information about K and O types for Klebsiella genome
assemblies.
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Given a novel genome and a database of known loci (K or O), Kaptive will
help a user to decide whether their sample has a known or novel locus.
It carries out the following for each input assembly:
.
* BLAST for all known locus nucleotide sequences (using blastn) to
identify the best match ('best' defined as having the highest
coverage).
* Extract the region(s) of the assembly which correspond to the BLAST
hits (i.e. the locus sequence in the assembly) and save it to a
FASTA file.
* BLAST for all known locus genes (using tblastn) to identify which
expected genes (genes in the best matching locus) are present/missing
and whether any unexpected genes (genes from other loci) are present.
* Output a summary to a table file.
.
In cases where your input assembly closely matches a known locus,
Kaptive should make that obvious. When your assembly has a novel type,
that too should be clear. However, Kaptive cannot reliably extract or
annotate locus sequences for totally novel types - if it indicates a
novel locus is present then extracting and annotating the sequence is up
to you! Very poor assemblies can confound the results, so be sure to
closely examine any case where the locus sequence in your assembly is
broken into multiple pieces.
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This package contains a reference database. Its not necessarily used
to run kaptive since you can use your own database.
Description-md5: 91d426d8e3ef447d958962fa9c2a2384