How to Install and Uninstall maffilter Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 02,2024

1. Install "maffilter" package

This is a short guide on how to install maffilter on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                maffilter
            
                    
    
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2. Uninstall "maffilter" package

Please follow the instructions below to uninstall maffilter on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                maffilter
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the maffilter package on Ubuntu 21.10 (Impish Indri)

Package: maffilter
Architecture: amd64
Version: 1.3.1+dfsg-2build1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1347
Depends: libboost-iostreams1.74.0 (>= 1.74.0), libbpp-core4 (>= 2.4.1), libbpp-phyl-omics3 (>= 2.4.1), libbpp-phyl12 (>= 2.4.1), libbpp-seq-omics3 (>= 2.4.1), libbpp-seq12 (>= 2.4.1), libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 9)
Suggests: maffilter-examples
Filename: pool/universe/m/maffilter/maffilter_1.3.1+dfsg-2build1_amd64.deb
Size: 263404
MD5sum: 47ed80f07b319afb72ba9bf793907f61
SHA1: a019cb48debdedf2ba479758e14cbc6c25af99f5
SHA256: c361d545ac5ef0bcbc1be859421d55871b69a3903a50e21192032f9862dce53c
SHA512: 8cf449a01677b3b91e43f25726768a806dd8b8da556be7011eb3d4ecb3fdbc4e8467c99525ea0ddae8dfa399c27f069c1adf2e41c928471c782ba8b3734a3453
Homepage: https://jydu.github.io/maffilter/
Description-en: process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
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* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
Description-md5: aa50f995e1a6505dce316b43d4d5b358