How to Install and Uninstall prottest Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 15,2024

1. Install "prottest" package

In this section, we are going to explain the necessary steps to install prottest on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                prottest
            
                    
    
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2. Uninstall "prottest" package

This guide covers the steps necessary to uninstall prottest on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                prottest
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the prottest package on Ubuntu 21.10 (Impish Indri)

Package: prottest
Architecture: all
Version: 3.4.2+dfsg-5
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 493
Depends: alter-sequence-alignment, libbetter-appframework-java, libmpj-java, libpal-java, java-wrappers, phyml
Filename: pool/universe/p/prottest/prottest_3.4.2+dfsg-5_all.deb
Size: 345412
MD5sum: 8ad21745137a6247876af5e56e2e18b6
SHA1: 6e62e5fa5fa72ddc276f4768d61826dc3b1d1f8c
SHA256: 22583bdcf8f4e84f735ff2c1060df6583a9090b3045053e999efab4059db272c
SHA512: b1e936e6ceab968c19040a1f7dbe75c51e11dd8a1608f13bff5f121d81b469db85b00a434bad5e35ddc901a0c0f18fc19b4f50522b0c6fa8e90660554f8d19a0
Homepage: https://github.com/ddarriba/prottest3
Description-en: selection of best-fit models of protein evolution
PROTTEST (ModelTest's relative) is a program for selecting the model of
protein evolution that best fits a given set of sequences (alignment).
This java program is based on the Phyml program (for maximum likelihood
calculations and optimization of parameters) and uses the PAL library as
well. Models included are empirical substitution matrices (such as WAG,
LG, mtREV, Dayhoff, DCMut, JTT, VT, Blosum62, CpREV, RtREV, MtMam,
MtArt, HIVb, and HIVw) that indicate relative rates of amino acid
replacement, and specific improvements (+I:invariable sites, +G: rate
heterogeneity among sites, +F: observed amino acid frequencies) to
account for the evolutionary constraints impossed by conservation of
protein structure and function. ProtTest uses the Akaike Information
Criterion (AIC) and other statistics (AICc and BIC) to find which of the
candidate models best fits the data at hand.
Description-md5: 1454155e5ec803ebc286ba865e4e36cf