How to Install and Uninstall prottest Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: May 18,2024

1. Install "prottest" package

This guide let you learn how to install prottest on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                prottest
            
                    
    
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2. Uninstall "prottest" package

Please follow the steps below to uninstall prottest on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                prottest
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the prottest package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: prottest
Priority: optional
Section: universe/science
Installed-Size: 904
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: all
Version: 3.4.1+dfsg-2
Depends: alter-sequence-alignment, libmpj-java, libnb-absolutelayout-java, libpal-java, java-wrappers, phyml
Filename: pool/universe/p/prottest/prottest_3.4.1+dfsg-2_all.deb
Size: 252314
MD5sum: ed8ccdde3fb38a93b71d9fadace563d3
SHA1: d1e1208a8a35c6cfd095583b49a00e4e10dbaf43
SHA256: efa50b4a5284618b35c56f51f21c82276169697f0327199fa9c55ae05c4158f5
Description-en: selection of best-fit models of protein evolution
PROTTEST (ModelTest's relative) is a program for selecting the model of
protein evolution that best fits a given set of sequences (alignment).
This java program is based on the Phyml program (for maximum likelihood
calculations and optimization of parameters) and uses the PAL library as
well. Models included are empirical substitution matrices (such as WAG,
LG, mtREV, Dayhoff, DCMut, JTT, VT, Blosum62, CpREV, RtREV, MtMam,
MtArt, HIVb, and HIVw) that indicate relative rates of amino acid
replacement, and specific improvements (+I:invariable sites, +G: rate
heterogeneity among sites, +F: observed amino acid frequencies) to
account for the evolutionary constraints impossed by conservation of
protein structure and function. ProtTest uses the Akaike Information
Criterion (AIC) and other statistics (AICc and BIC) to find which of the
candidate models best fits the data at hand.
Description-md5: 1454155e5ec803ebc286ba865e4e36cf
Homepage: https://github.com/ddarriba/prottest3
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu